Package: FLORAL
Type: Package
Title: Fit Log-Ratio Lasso Regression for Compositional Data
Version: 0.7.0
Date: 2026-02-07
Authors@R: c(
    person("Teng", "Fei", , "feit1@mskcc.org", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0001-7888-1715")),
    person("Tyler", "Funnell", role=c("aut"),
           comment = c(ORCID = "0000-0003-1612-5644")),
    person("Nicholas", "Waters", role=c("aut"),
           comment = c(ORCID = "0000-0002-9035-2143")),
    person("Sandeep", "Raj", role=c("aut"),
           comment = c(ORCID = "0000-0003-4629-0528"))
  )
Description: Log-ratio Lasso regression for continuous, binary, and
        survival outcomes with (longitudinal) compositional features.
        See Fei and others (2024) <doi:10.1016/j.crmeth.2024.100899>.
License: GPL (>= 3)
URL: https://vdblab.github.io/FLORAL/
BugReports: https://github.com/vdblab/FLORAL/issues
Depends: R (>= 3.5.0)
SystemRequirements: C++17
biocViews:
Imports: Rcpp (>= 1.0.9), stats, survival, ggplot2, reshape, dplyr,
        glmnet, caret, grDevices, utils, mvtnorm, doParallel, doRNG,
        foreach, msm, phyloseq
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
RoxygenNote: 7.3.2
Encoding: UTF-8
Suggests: covr, knitr, rmarkdown, spelling, testthat (>= 3.0.0),
        patchwork, tidyverse
Language: en-US
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev zlib1g-dev
Repository: https://vdblab.r-universe.dev
Date/Publication: 2026-09-29 17:44:50 UTC
RemoteUrl: https://github.com/vdblab/floral
RemoteRef: HEAD
RemoteSha: dd9b47d56ffd92cd5cebaf3b74780ba68638f97c
NeedsCompilation: yes
Packaged: 2026-09-30 07:10:20 UTC; root
Author: Teng Fei [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0001-7888-1715>),
  Tyler Funnell [aut] (ORCID: <https://orcid.org/0000-0003-1612-5644>),
  Nicholas Waters [aut] (ORCID: <https://orcid.org/0000-0002-9035-2143>),
  Sandeep Raj [aut] (ORCID: <https://orcid.org/0000-0003-4629-0528>)
Maintainer: Teng Fei <feit1@mskcc.org>