Package: FLORAL 0.3.0

Teng Fei

FLORAL: Fit Log-Ratio Lasso Regression for Compositional Data

Log-ratio Lasso regression for continuous, binary, and survival outcomes with compositional features. See Fei and others (2023) <doi:10.1101/2023.05.02.538599>.

Authors:Teng Fei [aut, cre, cph], Tyler Funnell [aut], Nicholas Waters [aut], Sandeep Raj [aut]

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FLORAL.pdf |FLORAL.html✨
FLORAL/json (API)
NEWS

# Install 'FLORAL' in R:
install.packages('FLORAL', repos = c('https://vdblab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/vdblab/floral/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

5.58 score 12 stars 16 scripts 180 downloads 4 exports 97 dependencies

Last updated 3 months agofrom:078024d135. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-win-x86_64OKOct 30 2024
R-4.5-linux-x86_64OKOct 30 2024
R-4.4-win-x86_64OKOct 30 2024
R-4.4-mac-x86_64OKOct 30 2024
R-4.4-mac-aarch64OKOct 30 2024
R-4.3-win-x86_64OKOct 30 2024
R-4.3-mac-x86_64OKOct 30 2024
R-4.3-mac-aarch64OKOct 30 2024

Exports:a.FLORALFLORALmcv.FLORALsimu

Dependencies:ast2astbootstrapcaretclasscliclockcodetoolscolorspacecpp11crayondata.tabledfdrdiagramdigestdoParalleldoRNGdplyre1071expmfansifarverforeachfuturefuture.applygenericsggplot2glmnetglobalsgluegowergtablehardhatipredisobanditeratorsKernSmoothlabelinglatticelavalifecyclelistenvlobstrlubridatemagrittrMASSMatrixmgcvModelMetricsmsmmunsellmvtnormnlmennetnumDerivparallellypillarpkgconfigplyrprettyunitspROCprodlimprogressrproxypryrpurrrR6RColorBrewerRcppRcppArmadilloRcppEigenRcppProgressrecipesreshapereshape2rlangrmetarngtoolsrpartscalesshapeSQUAREMstringistringrSuppDistssurvcompsurvivalsurvivalROCtibbletidyrtidyselecttimechangetimeDatetzdbutf8vctrsviridisLitewithr

Using FLORAL for Microbiome Analysis

Rendered fromUsing-FLORAL-for-Microbiome-Analysis.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2023-07-06
Started: 2023-04-27

Using FLORAL for survival models with longitudinal microbiome data

Rendered fromUsing-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2024-08-20
Started: 2024-08-20