Package: FLORAL 0.4.0

Teng Fei

FLORAL: Fit Log-Ratio Lasso Regression for Compositional Data

Log-ratio Lasso regression for continuous, binary, and survival outcomes with (longitudinal) compositional features. See Fei and others (2024) <doi:10.1016/j.crmeth.2024.100899>.

Authors:Teng Fei [aut, cre, cph], Tyler Funnell [aut], Nicholas Waters [aut], Sandeep Raj [aut]

FLORAL_0.4.0.tar.gz
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FLORAL.pdf |FLORAL.html✨
FLORAL/json (API)
NEWS

# Install 'FLORAL' in R:
install.packages('FLORAL', repos = c('https://vdblab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/vdblab/floral/issues

Pkgdown site:https://vdblab.github.io

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

Conda:

openblascppopenmp

5.85 score 12 stars 13 scripts 229 downloads 5 exports 128 dependencies

Last updated 20 days agofrom:26de38b965. Checks:7 OK, 4 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 17 2025
R-4.5-win-x86_64NOTEFeb 17 2025
R-4.5-mac-x86_64NOTEFeb 17 2025
R-4.5-mac-aarch64NOTEFeb 17 2025
R-4.5-linux-x86_64NOTEFeb 17 2025
R-4.4-win-x86_64OKFeb 17 2025
R-4.4-mac-x86_64OKFeb 17 2025
R-4.4-mac-aarch64OKFeb 17 2025
R-4.3-win-x86_64OKFeb 17 2025
R-4.3-mac-x86_64OKFeb 17 2025
R-4.3-mac-aarch64OKFeb 17 2025

Exports:a.FLORALFLORALmcv.FLORALphy_to_floral_datasimu

Dependencies:ade4apeaskpassast2astBiobaseBiocGenericsbiomformatBiostringsbootstrapcaretclasscliclockclustercodetoolscolorspacecpp11crayoncurldata.tabledfdrdiagramdigestdoParalleldoRNGdplyre1071expmfansifarverforeachfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataggplot2glmnetglobalsgluegowergtablehardhathttrigraphipredIRangesisobanditeratorsjsonliteKernSmoothlabelinglatticelavalifecyclelistenvlobstrlubridatemagrittrMASSMatrixmgcvmimeModelMetricsmsmmulttestmunsellmvtnormnlmennetnumDerivopensslparallellypermutephyloseqpillarpixmappkgconfigplyrprettyunitspROCprodlimprogressrproxypryrpurrrR6RColorBrewerRcppRcppArmadilloRcppEigenRcppProgressrecipesreshapereshape2rhdf5rhdf5filtersRhdf5librlangrmetarngtoolsrpartS4VectorsscalesshapespsparsevctrsSQUAREMstringistringrSuppDistssurvcompsurvivalsurvivalROCsystibbletidyrtidyselecttimechangetimeDatetzdbUCSC.utilsutf8vctrsveganviridisLitewithrXVector

Using FLORAL for Microbiome Analysis

Rendered fromUsing-FLORAL-for-Microbiome-Analysis.Rmdusingknitr::rmarkdownon Feb 17 2025.

Last update: 2025-02-17
Started: 2023-04-27

Using FLORAL for survival models with longitudinal microbiome data

Rendered fromUsing-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmdusingknitr::rmarkdownon Feb 17 2025.

Last update: 2025-02-17
Started: 2024-08-20

Using FLORAL with phyloseq data

Rendered fromUsing-FLORAL-with-phyloseq.Rmdusingknitr::rmarkdownon Feb 17 2025.

Last update: 2025-02-17
Started: 2025-02-17